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赤田 倫治

Affiliate Master Yamaguchi University

Publish Date (<span class="translation_missing" title="translation missing: en.view.desc">Desc</span>)
Taxonomic classification of whole eukaryotes using conserved proteins or nucleotide sequences that are used as criteria looks convenient and easy. However, these methods may not be reliable to long evolutionary history if their function is developed or degenerated in their life history. The sequence-based classification methods depending on the functional conservation may cause unknown bias. In this study, we propose novel classification using intron positions in a gene, which are not related to function. Intron positions of highly conserved ribosomal protein RPS13 gene were selected as novel criteria for the classification of whole eukaryotes from lower unicellular amoeba, algae, and flagellates to plants and animals. RPS13 gene encodes 151 amino acids and possesses 453 bp exon sequence in many eukaryotic organisms. The intron positions are determined based on their coding exon sequences, in which all the introns are designated by the positions from the first nucleotide of the start codon and the position numbers are attached with ‘i’ for intron indication. For example, human RPS13 gene contains introns at the positions of 24i, 73i, 152i, 322i, and 423i sites on the coding sequence. Interestingly, all the Deuterostomia animals including starfish, leech, and octopus showed the same intron positions to human. Similarly, all the land plants showed 24i, 97i, 236i, and 423i positions. In lower unicellular eukaryotes, which showed nonintron or variety of positions, only amoeba Lenisia limosa has the intron position of 152i site and Chlorophyta Pedinophyceae sp. has single 97i position, suggesting that they may be the ancestral organisms of animals and plants, respectively. As a conclusion, intron positions of RPS13 gene can be used as a guide for the taxonomic classification of eukaryotic organisms
Creators : Ebe Satoshi Kunishige Haruna Chajima Kengo Nakamura Hitomi Nakamura Yuki Hayashi Chise Hirakawa Haruka Yamaji Keisuke Hoshida Hisashi 赤田 倫治 Publishers : 山口大学工学部
Creators : Kikuta Hiroki Araki Koji Aramaki Takahiro Kubo Yuga Tabata Natsuki Motozono Shogo Hoshida Hisashi Akada Rinji Publishers : 山口大学工学部
seibutsu-kogaku kaishi Volume 91 Issue 12 pp. 708 - 711
published_at 2013-12-25
Creators : 赤田 倫治 中村 美紀子 星田 尚司 Publishers : 日本生物工学会
Yeast Volume 31 Issue 1 pp. 29 - 46
published_at 2014-01
Creators : Hoshida Hisashi Murakami Nobutada Suzuki Ayako Tamura Ryoko Asakawa Jun Abdel-Banat Babiker M A Nonklang Sanom Nakamura Mikiko Akada Rinji Publishers : Wiley
Biotechnology and biotechnological equipment Volume 27 Issue 1 pp. 3518 - 3521
published_at 2013-02
Creators : Novi Arfarita Imai Tsuyoshi Yarimizu Tohru Sun Xiaofeng Wei Jie Higuchi Takaya Akada Rinji Publishers : Diagnosis Press
Disease models & mechanisms : DMM Volume 3 pp. 605 - 617
published_at 2010-09
Creators : Akada Junko K. Aoki Hiroki Torigoe Yuji Kitagawa Takao Kurazono Hisao Hoshida Hisashi Nishikawa Jun Terai Shuji Matsuzaki Masunori Hirayama Toshiya Nakazawa Teruko Akada Rinji Nakamura Kazuyuki Publishers : Company of Biologists
Yeast Volume 27 Issue 1 pp. 29 - 39
published_at 2010-01
Creators : Abdel-Banat Babiker M. A. Nonklang Sanom Hoshida Hisashi Akada Rinji Publishers : John Wiley | Wiley
Bioscience, biotechnology, and biochemistry Volume 73 Issue 5 pp. 1090 - 1095
published_at 2009-05-23
Creators : Nonklang Sanom Ano Akihiko Abdel-banat Babiker M. A. Saito Yuko Hoshida Hisashi Akada Rinji Publishers : Japan Society for Bioscience, Biotechnology, and Agrochemistry | 公益社団法人日本農芸化学会
Applied microbiology and biotechnology Volume 83 Issue 4 pp. 783 - 789
published_at 2009-07
Creators : Kaneko Shohei Tanaka Tsutomu Noda Hideo Fukuda Hideki Akada Rinji Kondo Akihiko Publishers : Springer International | Springer
Gene : an international journal focusing on gene cloning and gene structure and function Volume 434 Issue 1-2 pp. 43 - 49
published_at 2009-04-01
Creators : Cha-aim Kamonchai Fukunaga Tomoaki Hoshida Hisashi Akada Rinji Publishers : Elsevier/North-Holland Biomedical Press | Elsevier Science
Bioscience, biotechnology, and biochemistry Volume 73 Issue 3 pp. 633 - 640
published_at 2009
Creators : Ano Akihiko Suehiro Daisuke Cha-Aim Kamonchai Aritomi Kazuo Phonimdaeng Prasart Nontaso Ngarmnit Hoshida Hisashi Mizunuma Masaki Miyakawa Tokichi Akada Rinji Publishers : Japan Society for Bioscience, Biotechnology, and Agrochemistry | 公益社団法人 日本農芸化学会
Applied and environmental microbiology Volume 74 Issue 24 pp. 7514 - 7521
published_at 2008-12
Creators : Nonklang Sanom Abdel-Banat Babiker M. A. Cha-aim Kamonchai Moonjai Nareerat Hoshida Hisashi Limtong Savitree Yamada Mamoru Akada Rinji Publishers : American Society for Microbiology
Infection and immunity Volume 75 Issue 3 pp. 1393 - 1402
published_at 2007-03
Creators : Kitagawa Takao Hoshida Hisashi Akada Rinji Publishers : American Society for Microbiology
Bioscience, biotechnology, and biochemistry Volume 71 Issue 3 pp. 772 - 782
published_at 2007-03-23
Creators : Kitagawa Takao Hashizume Yuko Murakane Tatsuhiko Koga Emi Nomura Yuki Kakihara Yoshito Fujieda Ayako Uchida Motoyuki Takahashi Hidetoshi Hoshida Hisashi Akada Rinji Publishers : Japan Society for Bioscience, Biotechnology, and Agrochemistry | 公益社団法人日本農芸化学会
Yeast Volume 23 Issue 5 pp. 399 - 405
published_at 2006-04-15
Creators : Akada Rinji Kitagawa Takao Kaneko Shohei Toyonaga Daiso Ito Sachiko Kakihara Yoshito Hoshida Hisashi Morimura Shigeru Kondo Akihiko Kida Kenji Publishers : John Wiley | Wiley
Applied microbiology and biotechnology Volume 69 Issue 6 pp. 689 - 696
published_at 2006-02
Creators : Hashimoto Shinji Aritomi Kazuo Minohara Takafumi Nishizawa Yoshinori Hoshida Hisashi Kashiwagi Susumu Akada Rinji Publishers : Springer International | Springer
Journal of applied phycology Volume 17 Issue 1 pp. 29 - 34
published_at 2005-01
Creators : Hoshida Hisashi Ohira Takayuki Minematsu Akira Akada Rinji Nishizawa Yoshinori Publishers : Kluwer Academic Publishers
Bioscience, biotechnology, and biochemistry Volume 69 Issue 6 pp. 1090 - 1097
published_at 2005-06-23
Creators : Hoshida Hisashi Fujita Tsuneyasu Murata Kenji Kubo Kanako Akada Rinji Publishers : Japan Society for Bioscience, Biotechnology, and Agrochemistry | (社団公益法人)日本農芸化学会
Applied and environmental microbiology Volume 71 Issue 1 pp. 312 - 319
published_at 2005-01
Creators : Hashimoto Shinji Ogura Mayumi Aritomi Kazuo Hoshida Hisashi Nishizawa Yoshinori Akada Rinji Publishers : American Society for Microbiology
ITE letters on batteries, new technologies & medicine Volume 6 Issue 2 pp. 135 - 139
published_at 2005-03-08
Creators : Kakihara Yoshito Matsuura Yasunobu Hoshida Hisashi Nishizawa Yoshinori Akada Rinji Publishers : ITE-IBA
Bioscience, biotechnology, and biochemistry Volume 68 Issue 1 pp. 68 - 73
published_at 2004-01
Creators : Aritomi Kazuo Hirosawa Isao Hoshida Hisashi Shiigi Mikio Nishizawa Yoshinori Kashiwagi Susumu Akada Rinji Publishers : Japan Society for Bioscience, Biotechnology, and Agrochemistry | 公益社団法人日本農芸化学会
Applied microbiology and biotechnology Volume 65 Issue 1 pp. 68 - 73
published_at 2004-07
Creators : Hirosawa I. Aritomi K. Hoshida H. Kashiwagi S. Nishizawa Y. Akada R. Publishers : Springer
Yeast Volume 19 Issue 5 pp. 393 - 402
published_at 2002-03-30
Creators : Akada Rinji Hirosawa Isao Kawahata Miho Hoshida Hisashi Nishizawa Yoshinori Publishers : Wiley
Yeast Volume 19 Issue 1 pp. 17 - 28
published_at 2002
Creators : Akada Rinji Shimizu Yoshirou Matsushita Yuji Kawahata Miho Hoshida Hisashi Nishizawa Yoshinori Publishers : Wiley
Journal of bioscience and bioengineering Volume 92 Issue 4 pp. 372 - 380
published_at 2001
Creators : Hoshida Hisashi Nakao Mitsuhide Kanazawa Hidenobu Kubo Kanako Hakukawa Toru Morimasa Koji Akada Rinji Nishizawa Yoshinori Publishers : Society for Bioscience and Bioengineering, Japan | 日本生物工学会
Journal of bioscience and bioengineering Volume 92 Issue 2 pp. 189 - 192
published_at 2001
Creators : Akada Rinji Hirosawa Isao Hoshida Hisashi Nishizawa Yoshinori Publishers : Society for Bioscience and Bioengineering, Japan | 日本生物工学会
BioTechniques Volume 28 Issue 5 pp. 854 - 856
published_at 2000
Creators : Akada Rinji Kawahata Miho Nishizawa Yoshinori Publishers : Eaton
BioTechniques Volume 28 Issue 4 pp. 668 - 674
published_at 2000
Creators : Akada Rinji Murakane Tatsuhiko Nishizawa Yoshinori Publishers : Eaton
Journal of bioscience and bioengineering Volume 87 Issue 1 pp. 43 - 48
published_at 1999-01
Creators : Akada Rinji Matsuo Kazuyoshi Aritomi Kazuo Nishizawa Yoshinori Publishers : Society for Bioscience and Bioengineering, Japan | 日本生物工学会
Yeast Volume 15 Issue 1 pp. 1 - 10
published_at 1999-01
Creators : Kawahata Miho Amari Shinji Nishizawa Yoshinori Akada Rinji Publishers : Wiley
Molecular and general genetics : MGG Volume 254 Issue 3 pp. 267 - 274
published_at 1997
Creators : Akada R. Yamamoto J. Yamashita I. Publishers : Springer
The journal of cell biology Volume 133 Issue 4 pp. 865 - 878
published_at 1996
Creators : Matsui Yasushi Matsui Rie Akada Rinji Toh-e Akio Publishers : Rockefeller Institute Press
Genetics Volume 143 Issue 1 pp. 103 - 117
published_at 1996-05
Creators : Akada Rinji Kallal Lorena Johnson Douglas I. Kurjan Janet Publishers : Princeton University Press | Genetics
BioTechniques Volume 17 Issue 1 pp. 58 - 58
published_at 1994
Creators : Akada Rinji Publishers : Eaton
Archives of microbiology Volume 152 Issue 5 pp. 484 - 487
published_at 1989-10
Creators : Akada R. Kai J. Yamashita I. Miyakawa T. Fukui S. Publishers : Springer
Molecular and cellular biology Volume 9 Issue 8 pp. 3491 - 3498
published_at 1989-08
Creators : Akada Rinji Minomi Kenjiro Kai Jingo Yamashita Ichiro Miyakawa Tokichi Fukui Sakuzo Publishers : American Society for Microbiology
Journal of Biological Chemistry Volume 287 Issue 38 pp. 31681 - 31690
published_at 2012-09-14
Creators : Watanabe Yasunori Kobayashi Takafumi Yamamoto Hayashi Hoshida Hisashi Akada Rinji Inagaki Fuyuhiko Ohsumi Yoshinori Noda Nobuo Publishers : Knickerbocker Press
Structure Volume 20 Issue 7 pp. 1244 - 1254
published_at 2012-07
Creators : Yamaguchi Masaya Noda Nobuo N. Yamamoto Hayashi Shima Takayuki Kumeta Hiroyuki Kobashigawa Yoshihiro Akada Rinji Ohsumi Yoshinori Inagaki Fuyuhiko Publishers : Cell Press
Yeast Volume 29 Issue 5 pp. 155 - 165
published_at 2012-05
Creators : Murakami Nobutaka Miyoshi Sae Yokoyama Ryo Hoshida Hisashi Akada Rinji Ogata Tomoo Publishers : John Wiley
日本生物工学会大会講演要旨集 Volume 63 pp. 44 - 44
published_at 2011-08-25
Creators : Hiraiwa Mika Nonklang Sanom Hoshida Hisashi Akada Rinji Publishers : 日本生物工学会
日本生物工学会大会講演要旨集 Volume 63 pp. 44 - 44
published_at 2011-08-25
Creators : Kobayashi Takahumi Yamura Toshihiro Hoshida Hisashi Akada Rinji Publishers : 日本生物工学会
日本生物工学会大会講演要旨集 Volume 63 pp. 8 - 8
published_at 2011-08-25
Creators : Akada Rinji F. Nakamura Mikiko Hoshida Hisashi Publishers : 日本生物工学会
DNA research : an international journal for rapid publication of reports on genes and genomes Volume 18 Issue 6 pp. 423 - 434
published_at 2011-12
Creators : Akao Takeshi Yashiro Isao Hosoyama Akira Kitagaki Hiroshi Horikawa Hiroshi Watanabe Daisuke Akada Rinji Ando Yoshinori Harashima Satoshi Inoue Toyohisa Inoue Yoshiharu Kajiwara Susumu Kitamoto Katsuhiko Kitamoto Noriyuki Kobayashi Osamu Kuhara Satoru Masubuchi Takashi Mizoguchi Haruhiko Nakao Yoshihiro Nakazato Atsumi Namise Masahiro Oba Takahiro Ogata Tomoo Ohta Akinori Sato Masahide Shibasaki Seiji Takatsume Yoshifumi Tanimoto Shota Tsuboi Hirokazu Nishimura Akira Yoda Koji Ishikawa Takeaki Iwashita Kazuhiro Fujita Nobuyuki Shimoi Hitoshi Publishers : Kazusa DNA Research Institute : Universal Academy Press
Creators : 赤田 倫治 Publishers : 山口大学ベンチャービジネスラボラトリー